EPI2ME

Overview

EPI2ME EPI2ME is an open-analysis bioinformatics platform produced by NanoPoreTech designed to process and analyse Oxford Nanopore sequencing data.

Using EPI2ME

The EPI2ME platform can be loaded with the following command: module load EPI2ME

Important

Many of the workflows in EPI2ME rely on the presence of a CUDA enabled GPU and will not work if run on a partition without a GPU

Instructions on using the individual workflows can be found on the epi2me-labs GitHub.

EPI2ME Components

The EPI2ME bundle loads the following individual modules:

• dorado - 2.1.2 (Includes all models)

• minimap2 - 2.30

• modkit - 0.6.4

• Nextflow - 25.10.2

• SAMtools - 1.22.1

• singularity-hpc/.0.1.33

Note

All modules have been built using foss/2025a / GCC 14.2.0