# EPI2ME

## Overview

[EPI2ME](https://epi2me.nanoporetech.com) EPI2ME is an open-analysis bioinformatics platform produced by [NanoPoreTech](https://nanoporetech.com) designed to process and analyse Oxford Nanopore sequencing data. 

## Using EPI2ME

The EPI2ME platform can be loaded with the following command:
`module load EPI2ME`

:::{important}
Many of the workflows in EPI2ME rely on the presence of a CUDA enabled GPU and will not work if run on a partition without a GPU
:::

Instructions on using the individual workflows can be found on the [epi2me-labs](https://github.com/epi2me-labs) GitHub.

## EPI2ME Components

The `EPI2ME` bundle loads the following individual modules:
* dorado - 2.1.2 (Includes all models)
* minimap2 - 2.30
* modkit - 0.6.4
* Nextflow - 25.10.2
* SAMtools - 1.22.1
* singularity-hpc/.0.1.33

:::{note}
All modules have been built using `foss/2025a` / `GCC 14.2.0`
:::