# Software Overview

DeepThought has multiple enterprise grade software suites either installed or under active development. These integrations run the gamut from Jupyter Notebooks for quality of life, to desktop integrations to the 
wider university software ecosystem.  

This page give a brief overview on what integrations or suites are installed and their associated access requirements. 

## Core Software

The following platforms allow the building of other software or facilitate running other software

1. [EasyBuild and Software Modules](../Software/EasyBuildAndModules.md)
2. [Singularity Containers](../Software/Singularity.md) 
3. [Open OnDemand Web Portal](../Software/OpenOnDemand.md)

## Web Applications in the Open OnDemand Portal

1. [Jupyter Notebooks](https://jupyter.org)
2. [RStudio](https://posit.co/products/open-source/rstudio)
3. [VS Code](https://code.visualstudio.com)

## List of Software Modules

A full list of the available software modules on the HPC is available in the Open OnDemand Web Portal at the following page: [Open OnDemand Module Browser](https://hpc.flinders.edu.au/pun/sys/dashboard/module-browser)

Software suites with complex pipelines or notable features have individual pages detailing their use:
* [EPI2ME](../Software/EPI2ME.md)
* [Miniconda3](../Software/Miniconda.md)
* [WRF with WPS](../Software/WRF.md)

## List of Legacy Enterprise Software Suites

The following pages describe software from the legacy DeepThought HPC:
1. [ANSYS](../Software/ANSYS.md) 
2. [Delft 3D](../Software/Delft3D.md)
3. [GROMACS](../Software/GROMACS.md) 
4. [Guassian16](../Software/Gaussian16.md)
5. [LAMMPS](../Software/LAMMPS.md)
6. [MATLAB](../Software/MATLAB.md)
7. [VASP](../Software/VASP.md)
8. [Open Data Cube](../Software/OpenDataCube.md)